[Frontiers in Bioscience 1, d270-308, October 1, 1996]
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CAVEAT LECTOR



STRUCTURE-FUNCTION RELATIONSHIP IN THE IL-1 FAMILY

Diana Boraschi, Paola Bossù, Giovanni Macchia, Paolo Ruggiero & Aldo Tagliabue

Dept. Biotechnology, Research Center Dompé SpA, Via Campo di Pile, I-67100 L'Aquila Italy

Received 8/5/96; Accepted 9/11/96; On-line 11/01/96

2. INTRODUCTION

The importance of IL-1 in the initiation and maintenance of adequate response to invasion has been established quite clearly and reported in detail in several excellent review articles (1-9). In synthesis, IL-1 is a cytokine produced mainly by mononuclear phagocytes in response to a variety of stimuli (in particular microbial components, irritants, etc.), and it represents one of the first events of reaction of an organism to infectious or inflammatory agents. IL-1 produced at the site of invasion/inflammation then stimulates surrounding cells to synthesize and release chemokines (which can attract to the site PMN, monocytes and T lymphocytes), and other cytokines (e.g. IL-2, IL-4, IL-6), and activates cells in various organs. Thus, IL-1 initiates both non-specific defensive mechanisms (e.g. the inflammatory response) and it stimulates and amplifies specific immunological reactions. Due to the extremely high efficiency of its actions, IL-1 production and activity need to be tightly regulated within the organism. In fact, dysregulation of either production or activating effects of IL-1 can lead to persistence of inflammation and to anomalous immune responses. The causal involvement of IL-1 in chronic inflammatory diseases and in autoimmune syndromes has been indeed clearly established. To better understand the complex network of interactions governing the activity and the shut off of IL-1, the various components of the IL-1 system will be briefly described hereafter (Figure 1).

Figure 1: The IL-1 system

Panel A: Interaction of agonist IL-1alpha and IL-1ß (represented as a red number one) with receptors on the surface of a responding cell is schematically represented in the cartoon. The agonist receptor IL-1RI is represented in green color, the inhibitory receptor IL-1RII in light green and the accessory protein IL-1RAcP in light blue. Soluble forms of the three receptors are also depicted. Initiation of intracellular signaling through the intracellular receptor domain is represented with a red arrow. The question mark indicates a biologically unknown or uncharacterized event.
Panel B: Interaction of antagonist IL-1ra (represented as a pink capital letter A) with receptors on the surface of an IL-1-responding cell is schematically represented in the cartoon. Symbols and colors are as in panel A. Interaction of IL-1ra with receptors prevents binding of agonist IL-1 and, in the case of IL-1RI, association of IL-1RAcP. Binding of IL-1ra to soluble IL-1RII is also represented, although its efficiency is very low and binding of IL-1ß is preferred.

2.1 IL-1alpha, IL-1ß and IL-1ra

The IL-1 family includes two agonist proteins, IL-1alpha and IL-1ß, which are able to trigger cell activation upon interaction with specific receptors on the membrane of responding cells. Both proteins are synthesized as 31 kDa precursors (pro-IL-1alpha and pro-IL-1ß) which are cleaved enzymatically to release the active mature 17 kDa IL-1 forms, i.e. the C-terminal fragments 113-271 for human IL-1alpha and 117-269 for human IL-1ß. IL-1 proteins lack a signal peptide and thus are not secreted through classical pathways and are unglycosylated proteins. For IL-1alpha, a biologically active membrane-bound form has been described, which is the myristoylated pro-IL-1alpha anchored to the membrane through lectin interaction with mannose residues. The preferential cell association of IL-1alpha, in contrast to the existence of IL-1ß primarily as a soluble protein, leads to the hypothesis of different biological roles for the two types of IL-1. The third member of the IL-1 family is IL-1ra, a pure receptor antagonist, which is a glycosylated secretory protein of about 23 kDa, synthesized with a 25 amino acid-long signal peptide, subsequently cleaved to a mature protein of 152 amino acids.

Genes for IL-1alpha, IL-1ß and IL-1ra are closely associated in the region 2q12-q21 of human chromosome 2, and are derived from gene duplications which occurred 320-400 M years ago (IL-1/IL-1ra divergence) and 270-300 M years ago (IL-1alpha/IL-1ß duplication) (10, 11). IL-1 genes are composed of seven exons and six introns, with two untranslated regions located in exons 1-2 and in exon 7, respectively. Promoter regions of the IL-1alpha and IL-1ß genes differ considerably, suggesting that the pattern of induction of the two genes in response to physiological and pathological stimulations are in fact distinct. The gene for IL-1ra presents a different organization, due to the fact that the same gene gives rise to three different protein products by alternative splicings (see amino acid sequences in Figure 2). The gene is composed by six exons and five introns. The secretory form of IL-1ra is coded for by the last four exons (exons 3-6), whereas the two intracellular forms of IL-1ra (icIL-1raI and icIL-1raII) are encoded by exons 1 + 3-6 and 1-6, respectively. The two intracellular forms of IL-1ra, present mainly in epithelial cells, are unglycosylated proteins which lack a signal peptide. These proteins, however, are able to exert biological activity which is identical to the functions of the secretory form of the protein (12, 13). Their physio-pathological role is still matter of debate.

N-terminal sequences
1. secreted IL-1raMEICRGLRSHLITLLLFLFHSETIC
(leader peptide)
2. icIL-1raIMALETIC
3. icIL-1raIIMALADLYEEGGGGGGEGEDNADSKETIC
| exon 1 |exon 2|exon 3|
Common IL-1ra sequence

RPSGR KSSKM QAFRI WDVNQ KTFYL RNNQL VAGYL QGPNV NLEEK IDVVP IEPHA LFLGI HGGKM CLSCV KSGDE TRLQL EAVNI TDLSE NRKQD KRFAF IRSDS GPTTS FESAA CPGWF LCTAM EADQP VSLTN MPDEG VMVTK FYFQE DE

exons 3-6

Figure 2: Amino acid sequence of human IL-1ra proteins

Amino acid sequences of the three forms of human IL-1ra are shown. Differences in N-terminal sequences are indicated in correlation with the exons encoding them: exon 3 for secreted IL-1ra; exons 1 and 3 for icIL-1raI; exons 1, 2 and 3 for icIL-1raII. The common sequence, encoded by exons 3-6, corresponds to amino acids 1-152 of the mature secreted IL-1ra, after cleavage of the leader peptide. Amino acids are indicated with the one-letter code.

Proteins of the IL-1 family exhibit about 20% homology at the amino acid level (Figure 3), but are very similar in their overall structure. Resolution of the crystal structure of IL-1ß, IL-1alpha and IL-1ra has revealed that IL-1 proteins are ß-barrels with a pseudo 3-fold axis, composed by 12 ß-strands organized in three trefoil units of four antiparallel ß-strands (Figure 4). Six of the strands form the barrel, whereas the other six form a sort of triangular array which closes the bottom of the barrel (14-19). The N- and C-terminals of the protein, and the exposed loops between ß-strands 4-5 (loop D) and 8-9 (loop H) are located at the open end of the barrel.

113   120       130       140       150       160       170
| | | | | | |
IL-1alpha
SAPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYK--
                :      | |: : |:: :    | |  |   |
IL-1ß
117           APVRSLNCTLRDSQQKSLVMSGPYELKALHLQGQDMEQQVVFSMSFVQ             164
                 :     : |  ||:  :      | |  |||  :       :  :
IL-1ra
         RPSGRKSSKMQAFRIWDVNQKTFYLRN- NQLVAGYLQGPNVNLEEKIDVVPI-
         |        |         |           |         |         |
1 10 20 30 40 50
          180       190           200       210       220
| | | | |
IL-1alpha
    SSKDDAKITVILRISKTQLYV-TAQD  --EDQPVLLKEMPEIPKTITGSETNLLFFWETHG-
          || |:| :   :||   :      :| | |  |    ||          | :
IL-1ß
165 GEESNDKIPVALGLKEKNLY--LSCVLK D DKPTLQLESVD-PKNYPKKKMEKRFVFNKIEI 222
     |        || |        ||||     |   ||||:|        :| :||| |
IL-1ra
    -EPH------ALFLGIHG  GKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDS
                   |           |          |         |         |
60 70 80 90 100
     230       240        250          260       270
| | | | |
IL-1alpha
     -TKNYFTSVAHPNLFIATKQ DYW VCL-AGGPP-SITDFQILENQA
       |  | |   || :|:| |     : :  ||      |      |
IL-1ß
223  NNKLEFESAQFPNWYISTSQ AENM PVFLGGTKG-GQDITDFTMQFVSS  269
         ||||   | |:: |:       || |      |  :| |  |
IL-1ra
    GPTTSFESAA CP GWFLCTAMEAD QP VSLTNMPDE GV MVTKFYFQEDE
        |           |          |           |          |
110 120 130 140 150

Figure 3: Sequence alignment of human IL-1 proteins

Alignment of amino acid sequences of the mature forms of human IL-1, human IL-1 and human secretory IL-1ra is shown (14, 16, 18). Numbering refers to that of pro-IL-1 for IL-1 and IL-1 (with the first residue of mature IL-1 being number 113, and the first of mature IL-1 being number 117) and to that of the mature protein, after removal of leader, for IL-1ra. Identities are indicated by vertical bars, whereas homologies are indicated by dots. Residues forming the twelve strands of the IL-1 structure are underlined.

Figure 4: Structure of IL-1 proteins

The 3D structure of human mature IL-1 is represented in the cartoon, viewed down the axis of the ß-barrel (14, 15, 119, 120). Structures of IL-1 and IL-1ra are very similar to that of IL-1 and are not depicted here (16, 18, 19, 132, 133). The twelve strands forming the IL-1 structure are represented by colored ribbons, with the arrowhead toward the C-terminal end of the protein. Loop sequences between strands are represented as gray strings. Artwork by Paolo Ruggiero.

2.2 ICE

The enzyme which converts pro-IL-1ß to the active 17 kDa mature form has been identified, cloned and characterized (20-22). ICE (Interleukin 1-Converting Enzyme) is a cysteine protease synthesized as a 45 kDa inactive precursor and which requires two internal cleavages to form the active heterodimeric enzyme. ICE can selectively cleave pro-IL-1ß between N116 and A117, thus forming the mature polypeptide 117-269. Other enzymes, however, can also non-specifically cleave pro-IL-1ß at different sites (e.g. HIV protease after residue 94, elastase after residues 103 and 113 and granzyme A after residue 120), generating abnormal IL-1ß molecules with reduced activity (23, 24). ICE is unable to convert pro-IL-1alpha to its mature form, but it can autocatalyze its own maturation. The homology of ICE with the protein encoded by the Caenorhabditis elegans gene ced-3 (25) has led to a series of important observations and considerations. In C. elegans, ced-3 is apparently responsible for programmed cell death, thus leading to the hypothesis that ICE plays a similar role in mammalian cells. Indeed, ICE and a series of newly discovered ICE-like enzymes appear to play a relevant role in cell apoptosis, independently of IL-1ß maturation (26). The mechanisms of regulation of ICE activation in relation to both IL-1ß production and cell death, and the reciprocal influence between the IL-1 system and the mechanisms of apoptosis, are currently matter of active investigation.

Figure 5: IL-1RI and IL-1RII

The cartoon shows a schematic representation of the two types of IL-1R. Amino- and carboxyl-terminal ends of the receptors are indicated as N and C, respectively. The extracellular portion of receptors includes three Ig-like domains, represented as circles, with S-S bridges indicated as light lines. Numbers of residues of extracellular, transmembrane and intracellular domains are reported. In the intracellular domain of IL-1RI, a thick area represents a potential protein kinase C acceptor site. The red arrow represents initiation of intracellular signaling. On the left is briefly reported the rank of ligand affinity (see text for detailed information).

2.3 IL-1RI, IL-1RAcP and signal transduction

Activation of target cells by IL-1 depends on the interaction of agonist proteins (IL-1alpha and IL-1ß) with specific receptors on the cell membrane. Since the identification of specific receptors for IL-1, a wealth of information has been gathered on these structures (9, 27-30). Two types of IL-1R have been identified, IL-1RI and IL-1RII (Figure 4). These proteins are coded for by genes located in close proximity of the IL-1 genes on human chromosome 2 (31, 32). Of the two receptors, apparently only IL-1RI is able to trigger cell activation upon interaction with the agonist ligands.

IL-1RI is a transmembrane protein belonging to the immunoglobulin superfamily, with a molecular weight of about 80 kDa (28, 9, 30). The extracellular domain of human IL-1RI consists of 319 amino acids, encompasses three Ig-like domains and is glycosylated. This domain is responsible for ligand binding and interacts with similar affinity either with agonist proteins IL-1alpha and IL-1ß or with the antagonist ligand IL-1ra. However, its interaction with IL-1ß is less efficient than those with other ligands (Figure 5). In addition, IL-1RI is able to bind with high affinity the pro-IL-1alpha molecule (which in fact is biologically active), whereas it cannot bind the pro-IL-1ß protein (which does not posses any IL-1-like biological effect). IL-1RI is expressed by all cells responsive to IL-1 and is the predominant type of IL-1R on T cells, fibroblasts, epithelial and endothelial cells.

The intracellular domain of IL-1RI is responsible for the initiation of the signal transduction mechanism leading to cell activation. The sequential signal transduction pathway initiated by IL-1/IL-1RI interaction has not been fully clarified, although a series of rapid events has been described which take place intracellularly within minutes after agonist binding. Among the events following receptor activation, hydrolysis of phospholipids, release of ceramide by neutral sphingomyelinase, multiple protein phosphorylation (including the IL-1RI intracellular domain), activation of phosphatases, involvement of G proteins and GTP hydrolysis have been described (reviewed in 9, 33-35). These events are followed by release of lipid mediators, activation of MAP kinases, Ser/Thr kinases and of the so-called "IL-1RI associated kinase". Some authors have described increase of cAMP, whereas no increase of intracellular Ca++ concentration could usually be detected. At later stages of the cell activation process, activation and nuclear translocation of transcriptional factors NFkB and AP-1 take place. A degree of difficulty in the understanding the pathways of IL-1-induced cell activation may come from the observation that in different cells different activation mechanisms can be used, involving different sets of events and enzymes. However, other explanations can be formulated. In fact, problems in understanding the mechanism of cell activation by IL-1 through IL-1RI came by the common observation that responsiveness to IL-1 does not usually correlate with the number of IL-1RI expressed on the cell surface, by identification of different classes of IL-1 binding affinity apparently attributable to IL-1RI exclusively and by the notion that IL-1ra could interact with IL-1RI without triggering cell activation.

These observations led to the hypothesis of the existence of a second receptor molecule which could complex to IL-1RI and modulate intracellular signaling and cell activation. The recent identification of a receptor accessory protein (IL-1RAcP) will possibly fill several gaps in our knowledge of the IL-1R system (36). IL-1RAcP is structurally very similar to IL-1RI, since it also belongs to the immunoglobulin superfamily, it is unable to bind IL-1 but it apparently associates to IL-1RI to increase its binding affinity for agonist ligand IL-1alpha and IL-1ß (Figure 6). Conversely, binding of the antagonist IL-1ra to IL-1RI does not trigger association of IL-1RAcP and no signaling occurs. The precise role of IL-1RAcP in the signal transduction mechanisms triggered by IL-1 is however still a matter of investigation.

Figure 6: IL-1RAcP

The cartoon shows a schematic representation of the murine IL-1RAcP, both in its membrane (IL-1RAcP) and in its soluble (sIL-1RAcP) forms. Amino- and carboxyl-terminal ends of the receptors are indicated as N and C, respectively. The extracellular portion of IL-1RAcP includes three Ig-like domains, represented as circles, with S-S bridges indicated as light lines. Numbers of residues of extracellular, transmembrane and intracellular domains are reported. In the intracellular domain, a thick area represents a potential protein kinase C acceptor site.

Both IL-1RI and IL-1RAcP are also found in soluble form, encompassing the extracellular Ig-like domain of the protein. Whereas the soluble IL-1RI apparently forms as result of a proteolytic event at the cell surface, soluble IL-1RAcP is the product of an alternative gene splicing. The functional role of these soluble receptors is not clear, in particular the role of sIL-1RAcP remains obscure. In the case of sIL-1RI, its excellent binding capacity for IL-1ra might suggest a possible role in controlling the potency of IL-1 antagonism (37).

2.4 IL-1RII

The second type of IL-1R, IL-1RII, also belongs to the immunoglobulin superfamily and shares many structural characteristics of IL-1RI. The main difference between IL-1RII and IL-1RI lies in the intracellular domain, which is extremely short for IL-1RII and is apparently unable to initiate signal transduction (Figure 5). Thus, the functional role of IL-1RII apparently is that of binding and sequestering IL-1, thus avoiding its interaction with IL-1RI and consequent cell triggering. IL-1RII can therefore be considered as a natural inhibitor of IL-1 activity, a function complementary to that of IL-1ra (9, 30, 32, 38, 39). IL-1RII is expressed by many cell types and is often co-expressed with IL-1RI. It is particularly abundant on B cells, mononuclear phagocytes, polymorphonuclear leukocytes and bone marrow cells. Affinity of IL-1RII for IL-1 proteins is quite different from what was observed for IL-1RI. In fact, IL-1RII can very efficiently bind IL-1ß, whereas its affinity for IL-1alpha and IL-1ra is 10-100-fold lower. The extracellular IL-1-binding domain of IL-1RII can be released from the cell surface by proteolytic cleavage and it can be found in biological fluids in large amounts during inflammatory conditions (40, 41). The biological significance of soluble IL-1RII is still unclear. Indeed, sIL-1RII maintains the same high affinity for IL-1ß as the membrane IL-1RII and thus has a pronounced inhibitory activity for IL-1ß (39, 42). On the other hand, sIL-1RII loses its ability to bind IL-1ra and acquires the capacity to bind pro-IL-1ß (39). These observations can lead to the hypothesis that, in fact, sIL-1RII may have a major role in the IL-1 inhibitory mechanisms, since it can capture active IL-1ß with high affinity whereas it can not sequester the antagonist IL-1ra (37, 39). Furthermore, capture of inactive pro-IL-1ß by sIL-1RII prevents its maturation to the active mature form, thus contributing to the down-regulation of IL-1 effects (39).

2.5 Biological and pathological role

The biological effects of IL-1 are multiple and are directed at many cell types and organs (1-9). Briefly, the biological role of IL-1 could be defined as the initiation of the defense reaction. IL-1, and in particular IL-1ß, are synthesized and released by mononuclear phagocytes and by many other cells in response to the classical inflammatory stimuli, such as microbial organisms and their components (2, 9). The activity of IL-1 in the inflammatory site initiates the host reaction to invasion. In fact, IL-1 stimulates the production of chemokines which can attract inflammatory cells such as PMN and monocytes, and immunocytes such as T lymphocytes (43). IL-1 can then activate the recruited cells to exert their defense functions (1-9). Furthermore, IL-1 can stimulate hematopoiesis by inducing synthesis of CSFs and by cooperating with them in the pathway of expansion and differentiation of myeloid precursors (9, 44, 45). In vivo, IL-1 shows a potent adjuvant effect and, in general, it enhances immune responses (46-48). IL-1 also induces strong inflammation, fever and pain (1-9, 49). Despite the fact that in vitro IL-1alpha apparently shares the vast majority of effects of IL-1ß, its physiological role remains unclear. The fact that IL-1alpha is mostly found cell-associated, either membrane-bound or intracellularly as active pro-IL-1alpha or localized to the nucleus, has led to the hypothesis that this molecule has a predominant role in intracellular signaling and in cell-to-cell contact (9, 50-53).

Due to the potent inflammatory and immunostimulatory effects of IL-1ß, its relevance in inflammatory and autoimmune pathologies has been investigated. Indeed, a large body of evidence has been gathered which indicates a causal role for IL-1ß in a series of pathological derangements involving abnormal inflammatory and immune reactivity, in particular in the persistence of such conditions (9). Abnormal production or abnormal down-regulation of IL-1ß has been demonstrated in septic shock, rheumatoid arthritis, inflammatory bowel diseases, psoriasis, autoimmune diabetes, bone and cartilage degradation in articular inflammation and osteoporosis, leukemias and solid tumors and many other pathological conditions (9).

Despite the fact that in several pathological situations the inhibition of IL-1 could be highly beneficial, the first trials with natural antagonists IL-1ra and sIL-1RI did not provide exciting results (54). Thus, it becomes necessary to analyze in detail our knowledge of the IL-1 system in order to lay the bases for a rational anti-IL-1 therapy. The major difficulty in antagonizing IL-1 effects comes from the fact that optimal cell activation could be achieved by triggering of as little as ten receptors per cell, and that therefore an antagonist, to be effective, must counteract 100% of the available IL-1 (9). Furthermore, a complete and precise knowledge of agonist vs. antagonist interaction with the two types of receptor is still missing. In the following discussion, the information available to date on the relationship between structure and function in the proteins of the IL-1 family will be extensively reported, with particular attention to data coming from mutagenesis analysis, as necessary groundstone for the future rational construction of improved IL-1 inhibitors for therapeutic use.

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