[Frontiers in Bioscience 15, 708-717, January 1, 2010]

Structure and function of archaeal prefoldin, a co-chaperone of group II chaperonin

Akashi Ohtaki, Keiichi Noguchi, Masafumi Yohda

Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan

TABLE CONTENTS

1. Abstract
2. Introduction
3. Structure of archaeal prefoldins
3.1. 3D structure of Archaea Prefoldin
3.2. Structure of the hydrophobic groove at the distal region of each subunit
3.3. Molecular dynamics in nonnative substrate protein binding
3.4. Substrate binding site in archaeal PFDs
4. Chaperonin-Prefoldin system
4.1. CPN-PFD system; Non native protein transfer from PFD to CPN
4.2. CPN binding site
5. Other structure and functions
5.1. Combinatorial diversity of PFD subunit
5.2. Homomeric complex of PFD subunit
6. Conclusion
7. Acknowledgment
8. References

1. ABSTRACT

Molecular chaperones are key cellular components involved in the maintenance of protein homeostasis and other unrelated functions. Prefoldin is a chaperone that acts as a co-factor of group II chaperonins in eukaryotes and archaea. It assists proper folding of protein by capturing nonnative proteins and delivering it to the group II chaperonin. Eukaryotic prefoldin is a multiple subunit complex composed of six different polypeptide chains. Archaeal prefoldin, on the other hand, is a heterohexameric complex composed of two  and four  subunits, and forms a double  barrel assembly with six long coiled coils protruding from it like a jellyfish with six tentacles. Based on the structural information of the archaeal prefoldin, substrate recognition and prefoldin-chaperonin binding mechanisms have been investigated. In this paper, we review a series of studies on the molecular mechanisms of archaeal PFD function. Particular emphasis will be placed on the molecular structures revealed by X-ray crystallography and molecular dynamics induced by binding to nonnative protein substrates.