PROTEIN SEARCH TOOLS
| SEARCH FOR PROTEINS: | SEARCH FOR DNA SEQUENCES: |
|---|
SEARCH FOR PROTEINS USING PHYSICAL OR CHEMICAL PROPERTIES
MassSearch: - Search SwissProt or EMBL Databases by protein mass after digestion at ETH-Zürich
GuessProt: - Retrieve SwissProt proteins given pI and Mw at ExPASy
Prot-ID: - Identify a protein from peptide fragment masses after enzymatic digestion at Rockefeller U.
MOOSE-Exposure: - Macromolecular Object Oriented Search Engine by protein exposure at Columbia U.
SEARCH FOR PROTEINS USING NUCLEOTIDE SEQUENCES
BLAST (BLAST: Basic Local Alignment Research Tool)
(NCBI)
BLAST (STANFORD)
BLAST (JAPAN)
BLAST (EERIE, FRANCE)
BLAST (CRIHAN, FRANCE)
BLAST (BAYLOR COLLEGE OF MEDICINE)
BLAST(SWITZERLAND)
BLASTPAT (BLAST-based Pattern Database Search)
BEAUTY (BLAST Enhanced Alignment Utility)
BLITZ
BLASTPAT: -
Search a database using BLAST-based patterns (see Documentation)
at Baylor College of Medicine
SSEARCH: - Universal database sequence comparison using the Smith-Waterman algorithm at EERIE-Nimes
PMOTIF: - Search for protein motifs in a gene sequence at U. Minnesota
NuclPepSearch: - Search SwissProt for a nucletide sequence at ETH-Zürich
PROSITE: - Protein sites and patterns database at ExPASy
ATLAS: - Search nucleotide and protein sequence databases at MIPS
SEARCH FOR PROTEINS USING PEPTIDE SEQUENCES
BLAST: - Basic Local Alignment Search Tool at NCBI
BLAST: (hiv, vector, etc) at Stanford U.
BLAST: at GenomeNet
BLAST: at EERIE-Nimes
BLAST: at CRIHAN
BLAST: (with Entrez and SRS Links) at Baylor College of Medicine
BLAST: at EPFL
BLASTPAT: - Search a database using BLAST-based patterns (see Documentation) at Baylor College of Medicine
FASTPAT: - Search a database using a FASTA-based pattern (see Documentation) at Baylor College of Medicine
SSEARCH: - Universal database sequence comparison using the Smith-Waterman algorithm at EERIE-Nimes
Swiss-Shop: - Automated SwissProt and Prosite information queries at ExPASy
MOOSE-Entity: - Macromolecular Object Oriented Search Engine by protein entity at Columbia U.
PepPepSearch: - Search SwissProt for peptide sequences at ETH-Zürich
MOTIF: - Search for protein sequence motifs at GenomeNet
MOTIF: at GenomeNet, with search from Iowa State
ProfileScan: - Search against a library of profiles at ISREC
PROPSEARCH: Protein identification in SwissProt and PIR using amino acid composition at EMBL-Heidelberg
TFASTA: - Search for a protein sequence against all six frames of GenBank nucleotide sequences at EERIE-Nimes
PatternFind: - Search the SwissProt and Genpept databases with a PROSITE-formatted pattern at ISREC
HHS: - SwissProt and PDB sequence class retrieval database at Washington U.
BLITZ: (see Documentation) at EBI
SEARCH FOR PROTEINS USING TEXT STRINGS
PIR: - Protein Identification Resource database query at John Hopkins
OWL: - Non-redundant protein sequence database query at John Hopkins and OWL: at UCL-London
GenQuest: - Search protein databases with the Qserver at John Hopkins
ENTREZ - Proteins: - Search protein database at NCBI
ENTREZ - 3D: - Search 3D image protein database at NCBI
ENTREZ - DNA: - Search nucleotide database at NCBI
ENTREZ - Medline: - Search citation database at NCBI
Molecules R US: - Interactive text and images of PDB files at NIH
MOOSE: - Macromolecular Object Oriented Search Engine to extract PDB information at Columbia U.
MOOSE-Demographic: - Macromolecular Object Oriented Search Engine by protein demographics at Columbia U.
SwissProt: - Protein sequence database query at ExPASy
Swiss-Shop: - Automated SwissProt and Prosite information queries at ExPASy
SWISSDOM: - SwissProt entries as a ProDom Map at EBI
PMD: - Search the Protein Mutant Database at GenomeNet and PMD: at EMBL-Heidelberg
PRF: - Protein Research Foundation sequence database at GenomeNet
Darwin: - Data Analysis and Retrieval With Indexed Nucleotide/Peptide Sequences at ETH-Zürich
MIPS-Alert:- Automated sequence information queries at MIPS
SEARCH FOR DNA SEQUENCES USING PEPTIDE SEQUENCES
BLAST: - Basic Local
Alignment Search Tool at NCBI
BLAST: (hiv, vector, etc) at Stanford U.
BLAST: at GenomeNet
BLAST: at EERIE-Nimes
BLAST: at CRIHAN
BLAST: (with Entrez and SRS Links) at Baylor College of Medicine
BLAST: at EPFL
BLASTPAT: - Search a database using BLAST-based patterns (see Documentation) at Baylor College of Medicine
FASTPAT: - Search a database using a FASTA-based pattern (see Documentation) at Baylor College of Medicine
SSEARCH: - Universal database sequence comparison using the Smith-Waterman algorithm at EERIE-Nimes