Protein Analysis Tools; by function

	FRONTIERS IN BIOSCIENCE; PROTEIN ANALYSIS TOOLS; LISTED BY FUNCTION
	[ Evaluate/Calculate ] [ Correlate/Match ] [ Translate/Reprint ] EVALUATE OR CALCULATE PROTEIN SEQUENCE: STRUCTURE nnPredict: - Predict protein secondary structure at UCSF nnPredict: with search from Iowa State PHD: - Predict protein secondary structure at EMBL PHD search from Iowa State PSSP: - Protein Secondary Structure Prediction at Baylor PredictProtein: - Predict protein secondary structure at EMBL SOPM: - Self Optimized Prediction Method of protein secondary structure at IBCP-CNRS SSPRED: - Secondary Structure PREDiction for proteins at EMBL STRIDE: - Find secondary structural elements in PDB proteins structures at EMBL Swiss-Model: - Automated protein modelling at ExPASy TMpred: - Predict transmembrane regions and orientation in protein sequencs at ISREC TMAP: - Identify transmembrane segments in a protein sequence at EMBL ZPRED: - Multi-predict secondary structure of multiply aligned sequences at Ludwig Institute MOTIFS Coils: - Predict Coiled Coil regions in sequences at ISREC MOTIF: - Search for protein sequence motifs at GenomeNet MOTIF: at GenomeNet with search from Iowa State PMOTIF: - Search for protein motifs in a gene sequence at U. Minnesota PSORT: - Predict sorting signals and localization sites coded in sequences at GenomeNet REPRO: - Recognition of sequence repeats at EMBL IDENTIFICATION PROPSEARCH: - Protein identification in SwissProt and PIR using amino acid composition at EMBL PROPSEARCH: - Protein identification by homology based on amino acid properties at EMBL Prot-ID: - Identify a protein from fragment masses after digestion at Rockefeller U. PROPERTIES ASC: - Analytic surface calculation of PDB protein structures at EMBL Phospepsort: - Digest phosphorylated peptide sequences at EERIE-Nimes pI/Mw: - Compute the theoretical pI and MW of a SwissProt sequence at ExPASy SAPS: - Statistical Analysis of Protein Sequences at ISREC CORRELATE OR MATCH PROTEIN SEQUENCE: ALIGNMENT ALIGN: - Optimal global alignment of two sequences at EERIE-Nimes ALIGN: at MIPS LALIGN: - Determine the n-best Local ALIGNments between two sequences at EERIE-Nimes LFASTA: - Local similarity between two sequences showing local alignments at EERIE-Nimes PATTERN FTHOM: - Protein domain homology comparison at ABC HPT: - Protein sequence pattern recognition in PIR at MIPS HPT-Homology: - Sequence recognition by homology at MIPS PatScan: - Search for pattern matches in sequences at Argonne National Laboratory PatternFind: - Search SwissProt and Genpept with a PROSITE-formatted pattern at ISREC COMPOSITION AA CompSim: - Compare amino acid composition of a SwissProt entry with other entries at ExPASy AA Sequence Analysis: - Multiple analysis of amino acid sequence at Rockefeller U. AMAS: - Analyse Multiply Aligned Sequences at U. Oxford OBSTRUCT: - Correlate sequence subsets of PDB protein structures at EMBL PSA: - Protein Sequence Analysis for sequences of unknown structure at BMERC/MBCRR TRANSLATE OR PRETTY PRINT PROTEIN SEQUENCE: TRANSLATE TFASTA: - Search for a protein sequence against GenBank DNA sequences at EERIE-Nimes Translate: - Translate a nucleotide sequence to protein at ExPASy Translate: at EBI PRINT BOXSHADE: - Pretty printing of multiple sequence alignments at ISREC VisProt: - Colour amino acid sequences by hydrophobicity at EBI VisAlign: - Colour two aligned amino acid sequences by hydrophobicity at EBI WebLogo: - Sequence logo generation at Cambridge U.