Protein Finder

Perform general protein sequence/pattern searches using the BCM Launcher
Paste the protein sequence, <7000 amino acid in length (raw sequence, no header, etc),
in the query box below here. For longer sequences use the E-mail.

Sequence name/identifier (optional):
Email address (when required):

Choose search method / database:
[H][O][P][E] = [H]:Help/description; [O]:full Options search; [P]:search Parameters; [E]:Example search
See Also: Species-Specific Protein Sequence Search Page

BLASTP+BEAUTY / nr protein - NCBI's BLASTP with BCM's BEAUTY post-
processing that adds annotated domain information (NCBI/BCM) [H] [O] [P] [E]
TBLASTN / nr dna - query vs. 6-frame translation of nr dna
with Entrez & SRS links (NCBI/BCM) [H] [O] [P] [E]
TBLASTN / dbest - query vs. 6-frame translation of dbest
with Entrez & SRS links (NCBI/BCM) [H] [O] [P] [E]
BEAUTY / CRSeqAnnot - Seq family and domain information added to BLAST
searches of the BCM CRSeqAnnot DB (BCM) [H] [O] [P] [E]
FASTA-SWAP / EC Pattern DB - FASTA-based pattern db search (BCM) [H] [O] [P] [E]
FASTA-SWAP / PIMA Pattern DB - FASTA-based pattern db search (BCM) [H] [O] [P] [E]
PPSEARCH / PROSITE Pattern DB - (EBI) [H] [O] [P] [E]
BLOCKS Search / BLOCKS - (FHCRC) [H] [O] [P] [E]
FASTA / SwissProt - (JHU/ORNL:GenQuest) [H] [O] [P] [E]
The following servers return search results via Email:
BLASTP / SBASE annotated domains - (ICGEB, Email search) [H] [O] [P] [E]
BLITZ / SwissProt - (EMBL, Email search) [H] [O] [P] [E]
SSEARCH / SwissProt - (EERIE, Email search) [H] [O] [P]